Nextflow workflow report

[nice_lichterman] (resumed run)

Workflow execution completed successfully!
Run times
08-Feb-2022 11:04:38 - 08-Feb-2022 12:03:30 (duration: 58m 52s)
  1 succeeded  
  2385 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow /dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/code/SPEAQeasy/main.nf --sample paired --reference hg38 --strand reverse --strand_mode declare --annotation /dcs04/lieber/lcolladotor/annotationFiles_LIBD001/SPEAQeasy/Annotation -with-report /dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/processed-data/01_SPEAQeasy/execution_reports/02_run_pipeline.html -w /dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/processed-data/01_SPEAQeasy/work --input /dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/processed-data/01_SPEAQeasy --output /dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/processed-data/01_SPEAQeasy/pipeline_output -profile jhpce -resume
CPU-Hours
4'617.7 (100% cached)
Launch directory
/dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/code/01_SPEAQeasy
Work directory
/dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/processed-data/01_SPEAQeasy/work
Project directory
/dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/code/SPEAQeasy
Script name
main.nf
Script ID
35488eef1272f188bb33fc239158ac46
Workflow session
50fc9ffc-74b1-44a7-880c-edf1dc36cb08
Workflow profile
jhpce
Nextflow version
version 20.01.0, build 5264 (12-02-2020 10:14 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)